docs: correct the module lists in AGENTS.md and CLAUDE.md

AGENTS.md

@@ -47,26 +47,33 @@ the FastAPI adapter and the "core stays web-free" boundary.
 
 ```
 src/aegis_gitea_mcp/
-  catalog/      generated tool catalog: model.py (done), tools.json + loader (chunk B2)
-  gitea/        executor: templating, HTTP, pagination, errors, envelope (chunk B3)
-  server.py     SDK low-level Server, list/call dispatch, filters (chunk B4)
-  transports    stdio entry, streamable HTTP app, /health, bind checks (chunk B4)
-  oauth/        SDK OAuth provider proxying Gitea, token store, verifier (chunk B5)
-  setup.py      `aegis-gitea-mcp setup` command (chunk B6)
-  cli.py        argparse entry: serve (default), setup, version (skeleton done)
-  config.py     pydantic-settings Settings, get_settings()/reset_settings()
-  identity.py   Identity(login, mode, token) carried through each call
-  errors.py     ToolError, GiteaAPIError(status, kind, message)
-  audit.py      hash-chained audit log; security.py secret masking;
+  catalog/        generated tool catalog: model.py (Operation, Parameter), build.py
+                  (swagger to catalog, annotations), naming.py, schema.py,
+                  tools.json (generated, never hand-edited), __init__.py (loader)
+  gitea/          executor: executor.py (HTTP, envelope, redaction, limits),
+                  encoding.py (path, query, body, upload building), pagination.py,
+                  redaction.py (exact-match secret redaction)
+  setup_cmd.py    `aegis-gitea-mcp setup`: verify instance, register OAuth app, write .env
+  setup_snippets.py  client config snippets printed by setup
+  setup_template.py  built-in .env template used by setup
+  cli.py          argparse entry: serve (default), setup, version
+  config.py       pydantic-settings Settings, get_settings()/reset_settings()
+  identity.py     Identity(login, mode, token) carried through each call
+  errors.py       ToolError, GiteaAPIError(status, kind, message)
+  audit.py        hash-chained audit log; security.py secret masking;
   response_limits.py, rate_limit.py (HTTP), request_context.py, logging_utils.py
-scripts/        generate_catalog.py (B2), validate_audit_log.py, check_docs.py (B11)
+  server.py, transports, oauth/   planned (chunks B4, B5), not present yet
+scripts/        generate_catalog.py, validate_audit_log.py, ci/, check_docs.py (B11)
 spec/           pinned Gitea swagger
+tests/integration/  live Gitea in Docker (harness.py), opt-in
 ```
 
-Modules marked with a chunk id do not exist yet. Request flow (target):
+Modules marked planned do not exist yet. Request flow (target):
 client -> SDK transport and auth verifier -> `Identity` -> toolset/read-only
 filters -> schema validation -> executor (Gitea call with the identity's token,
 optional `sudo`) -> limits and masking -> result envelope (ADR 0005) -> audit.
+The executor and the catalog exist; the server and transports that connect them
+to MCP clients do not yet.
 
 ## Commands