first version of the knowledge base :)
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title: YubiKey Usage
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description: Guide to using a YubiKey for SSH, authentication, and key protection in self-hosted environments
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tags:
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- security
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- yubikey
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- ssh
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category: security
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created: 2026-03-14
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updated: 2026-03-14
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---
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# YubiKey Usage
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## Introduction
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A YubiKey is a hardware token that can protect authentication and cryptographic operations. In homelab and engineering workflows, it is commonly used for MFA, SSH keys, and protection of GPG subkeys.
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## Purpose
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Use a YubiKey when you want:
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- Stronger authentication than password-only login
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- Private keys that require physical presence
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- Portable hardware-backed credentials for administrative access
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## Architecture Overview
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YubiKeys can be used through different interfaces:
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- FIDO2 or WebAuthn: MFA and modern hardware-backed authentication
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- OpenSSH security keys: SSH keys such as `ed25519-sk`
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- OpenPGP applet: card-resident GPG subkeys
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- PIV: smart-card style certificate workflows
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Choose the interface based on the workflow instead of trying to use one mode for everything.
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## Step-by-Step Guide
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### 1. Use the key for MFA first
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Register the YubiKey with identity providers and critical services before moving on to SSH or GPG workflows.
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### 2. Create a hardware-backed SSH key
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On a system with OpenSSH support for security keys:
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```bash
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ssh-keygen -t ed25519-sk -C "admin@example.com"
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```
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This creates an SSH key tied to the hardware token.
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### 3. Install the public key on servers
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```bash
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ssh-copy-id -i ~/.ssh/id_ed25519_sk.pub admin@server.example
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```
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### 4. Test login
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```bash
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ssh admin@server.example
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```
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Expect a touch prompt when required by the device policy.
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## Configuration Example
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Example client SSH config for a dedicated administrative target:
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```text
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Host lab-admin
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HostName server.example
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User admin
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IdentityFile ~/.ssh/id_ed25519_sk
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```
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For GPG workflows, move only subkeys onto the YubiKey and keep the primary key offline when possible.
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## Troubleshooting Tips
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### The key is not detected
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- Confirm USB or NFC access is available
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- Check whether another smart-card daemon has locked the device
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- Verify the client OS has support for the intended mode
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### SSH prompts repeatedly or fails
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- Make sure the correct public key is installed on the server
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- Confirm the client is offering the security-key identity
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- Check that the OpenSSH version supports the selected key type
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### GPG or smart-card workflows are inconsistent
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- Verify which YubiKey applet is in use
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- Avoid mixing PIV and OpenPGP instructions unless the workflow requires both
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- Keep backup tokens or recovery paths for administrative access
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## Best Practices
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- Use the YubiKey as part of a broader account recovery plan, not as the only path back in
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- Keep at least one spare token for high-value admin accounts
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- Prefer hardware-backed SSH keys for administrator accounts
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- Document which services rely on the token and how recovery works
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- Separate MFA usage from certificate and signing workflows unless there is a clear operational reason to combine them
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## References
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- [Yubico: SSH](https://developers.yubico.com/SSH/)
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- [Yubico: YubiKey and OpenPGP](https://developers.yubico.com/PGP/)
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- [Yubico developer documentation](https://developers.yubico.com/)
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